Name | Topic |
|---|---|
Remains of the Day - SQL | SQL |
Part I: Reproducible analyses in R with Docker | R, Docker, reproduciblility |
Part II: Reproducible analyses in R with Docker | R, Docker, reproducibility, volume-mounting |
Part III: Reproducible analyses in R with Docker | Docker, R, reproducibility, privacy |
Docker for Reproducible Analyses in R | Docker, R, reproducibility, analysis, GitHub, renv |
Creating reproducible analyses… when you’re not the author of the code | DevOps, Scientific Computing, Reproducibility, ML |
Using Pyenv and Virtualenv for managing multiple Python versions and environments | Pyenv, Virtualenv, Python |
Docker Diaries: Docker → Singularity | Docker, Singularity, HPC |
Creating a new Docker Image from a Running Container | Docker Image |
Run a Docker container - identify transdiagnostic latent factors | Reproducibility |
hello-world.nf on the research cluster | Nextflow, Bioinformatics |
hello-world.nf meets GitHub Actions | Nextflow, Bioinformatics |
Articles that I revisit over years | Musings |
Who are research software engineers? Part I | |
Why I decided to pursue Carpentries Instructor Certification | reproducibility, community |
WIP: RNA-Seq Data Analysis On-Ramp Notes |